IL_5XYU_055

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CCGAAG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_055 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2821

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5XYU|1|A|C|1413
5XYU|1|A|C|1414
5XYU|1|A|G|1415
5XYU|1|A|A|1416
5XYU|1|A|A|1417
5XYU|1|A|G|1418
*
5XYU|1|A|C|1450
5XYU|1|A|G|1451
5XYU|1|A|A|1452
5XYU|1|A|A|1453
5XYU|1|A|G|1454

Current chains

Chain A

16S RNA

Nearby chains

Chain T

30S ribosomal protein S20