IL_5XYU_056

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GCCG*CGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_056 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2724

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5XYU|1|A|G|1418
5XYU|1|A|C|1419
5XYU|1|A|C|1420
5XYU|1|A|G|1421
*
5XYU|1|A|C|1447
5XYU|1|A|G|1448
5XYU|1|A|U|1449
5XYU|1|A|C|1450

Current chains

Chain A

16S RNA

Nearby chains

Chain T

30S ribosomal protein S20