IL_5XYU_061

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUGCUG*CUGGUAG

Length

13 nucleotides

Bulged bases

5XYU|1|A|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_061 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3296

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5XYU|1|A|C|183
5XYU|1|A|U|184
5XYU|1|A|G|185
5XYU|1|A|C|186
5XYU|1|A|U|187
5XYU|1|A|G|188
*
5XYU|1|A|C|199
5XYU|1|A|U|200
5XYU|1|A|G|201
5XYU|1|A|G|202
5XYU|1|A|U|203
5XYU|1|A|A|204
5XYU|1|A|G|205

Current chains

Chain A

16S RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20