IL_5XZ1_003
3D structure
- PDB id
- 5XZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- AAAAG*CGCU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XZ1_003 not in the Motif Atlas
- Geometric match to IL_8CRE_469
- Geometric discrepancy: 0.3229
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11399.2
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5XZ1|1|A|A|15
5XZ1|1|A|A|16
5XZ1|1|A|A|17
5XZ1|1|A|A|18
5XZ1|1|A|G|19
*
5XZ1|1|B|C|30
5XZ1|1|B|G|31
5XZ1|1|B|C|32
5XZ1|1|B|U|33
Current chains
- Chain A
- RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')
- Chain B
- RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')
Nearby chains
- Chain C
- RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')
- Chain D
- RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')
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