IL_5XZ1_007

3D structure

PDB id

5XZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

AAAAG*CGCU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XZ1_007 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3593

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5XZ1|1|C|A|61
5XZ1|1|C|A|62
5XZ1|1|C|A|63
5XZ1|1|C|A|64
5XZ1|1|C|G|65
*
5XZ1|1|D|C|76
5XZ1|1|D|G|77
5XZ1|1|D|C|78
5XZ1|1|D|U|79

Current chains

Chain C

RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')

Chain D

RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')

Nearby chains