IL_5YLZ_005
3D structure
- PDB id
- 5YLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 5YLZ|1|D|A|79, 5YLZ|1|D|U|80
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5YLZ_005 not in the Motif Atlas
- Geometric match to IL_4WF9_096
- Geometric discrepancy: 0.0903
- The information below is about IL_4WF9_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
5YLZ|1|D|C|67
5YLZ|1|D|C|68
*
5YLZ|1|D|G|78
5YLZ|1|D|A|79
5YLZ|1|D|U|80
5YLZ|1|D|G|81
Current chains
- Chain D
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- mRNA/intron lariat
- Chain F
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain I
- Pre-mRNA-splicing factor CLF1
- Chain J
- Pre-mRNA-splicing factor CEF1
- Chain M
- Pre-mRNA-splicing factor SLT11
- Chain P
- Pre-mRNA-splicing factor CWC15
- Chain Q
- Pre-mRNA-processing protein 45
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