IL_5Z1I_002

3D structure

PDB id

5Z1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_64417.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

5Z1I|1|A|C|7
5Z1I|1|A|G|8
5Z1I|1|A|C|9
*
5Z1I|1|A|G|16||||8_555
5Z1I|1|A|A|17||||8_555
5Z1I|1|A|A|18||||8_555
5Z1I|1|A|G|19||||8_555

Current chains

Chain A

RNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Nearby chains