Motif IL_31737.2 Version IL_31737.2 of this group appears in releases 3.92 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8VFS_003 | 8VFS | 0.2677 | 1 | A+B | RNA (27-MER) | C | 14 | C | 15 | G | 16 | * | C | 14 | G | 16 | cWW | cWW | |
| 2 | IL_4WF9_047 | 4WF9 | 0.3063 | 1 | Intercalated cWW | X | LSU rRNA | G | 1266 | A | 1267 | C | 1268 | * | G | 1257 | U | 1259 | cWW | cWW |
| 3 | IL_2O3X_001 | 2O3X | 0.1302 | 1 | Stack and bulge | B+A | RNA (23-mer) | G | 42 | U | 43 | C | 44 | * | G | 5 | C | 7 | cWW | cWW |
| 4 | IL_2ET8_001 | 2ET8 | 0.0000 | 1 | Stack and bulge | B+A | RNA (22-mer) | G | 41 | U | 42 | C | 43 | * | G | 4 | C | 6 | cWW | cWW |
| 5 | IL_7A0S_044 | 7A0S | 0.2396 | 1 | Intercalated cWW | X | LSU rRNA | G | 1241 | A | 1242 | G | 1243 | * | U | 1232 | C | 1234 | cWW | cWW |
| 6 | IL_4M4O_004 | 4M4O | 0.3623 | 1 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | C | 41 | cWW | cWW | |
| 7 | IL_4M6D_013 | 4M6D | 0.4085 | 1 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | C | 41 | cWW | cWW | |
| 8 | IL_2O3X_003 | 2O3X | 0.2934 | 2 | Decoding loop related | B+A | RNA (23-mer) | C | 30 | A | 31 | C | 32 | * | G | 16 | G | 19 | cWW | cWW |
| 9 | IL_3C3Z_002 | 3C3Z | 0.5172 | 2 | Decoding loop related | B+A | HIV-1 subtype F genomic RNA | C | 15 | A | 16 | C | 17 | * | G | 7 | G | 10 | cWW | cWW |
| 10 | IL_8UO6_002 | 8UO6 | 0.5157 | 2 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | C | 41 | G | 42 | C | 43 | * | G | 60 | G | 63 | cWW | cWW | |
| 11 | IL_5Z1I_002 | 5Z1I | 0.4535 | 2 | Decoding loop related | A | RNA (21-mer) | C | 7 | G | 8 | C | 9 | * | G | 16||||8_555 | G | 19||||8_555 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUC*GUC | 2 |
| GAG*CAC | 2 |
| CAC*GAAG | 2 |
| CCG*CCG | 1 |
| GAC*GAU | 1 |
| GAG*UAC | 1 |
| CGC*GACG | 1 |
| CGC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 4 |
| U*U | 2 |
| A*AA | 2 |
| C*C | 1 |
| G*AC | 1 |
| G*AA | 1 |
- Annotations
-
- (4)
- Decoding loop related (3)
- Stack and bulge (2)
- Intercalated cWW (2)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.12 | Avg 0.38 | Max 0.71
Coloring options: