IL_5Z3G_012

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_012 not in the Motif Atlas

Geometric match to IL_5MWI_002

Geometric discrepancy: 0.2042

The information below is about IL_5MWI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5Z3G|1|A|G|272
5Z3G|1|A|A|273
5Z3G|1|A|G|274
*
5Z3G|1|A|C|291
5Z3G|1|A|U|292
5Z3G|1|A|C|293

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L15-A

Chain a

Ribosome biogenesis protein BRX1

Chain m

60S ribosomal protein L36-A