IL_5Z3G_019

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_019 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2287

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

5Z3G|1|A|U|461
5Z3G|1|A|C|462
5Z3G|1|A|C|463
*
5Z3G|1|A|G|468
5Z3G|1|A|G|469

Current chains

Chain A

25S rRNA

Nearby chains

Chain X

Ribosomal RNA-processing protein 1

Chain Z

Protein MAK16