IL_5Z3G_032

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AAGCUCGUAUC*GAAGAGCUU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5Z3G|1|A|A|972
5Z3G|1|A|A|973
5Z3G|1|A|G|974
5Z3G|1|A|C|975
5Z3G|1|A|U|976
5Z3G|1|A|C|977
5Z3G|1|A|G|978
5Z3G|1|A|U|979
5Z3G|1|A|A|980
5Z3G|1|A|U|981
5Z3G|1|A|C|982
*
5Z3G|1|A|G|1101
5Z3G|1|A|A|1102
5Z3G|1|A|A|1103
5Z3G|1|A|G|1104
5Z3G|1|A|A|1105
5Z3G|1|A|G|1106
5Z3G|1|A|C|1107
5Z3G|1|A|U|1108
5Z3G|1|A|U|1109

Current chains

Chain A

25S rRNA

Nearby chains

Chain J

60S ribosomal protein L7-A

Chain U

60S ribosomal protein L18-A