IL_5Z3G_050

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_050 not in the Motif Atlas

Homologous match to IL_8C3A_130

Geometric discrepancy: 0.357

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5Z3G|1|A|C|3164
5Z3G|1|A|A|3165
5Z3G|1|A|C|3166
*
5Z3G|1|A|G|3284
5Z3G|1|A|C|3285
5Z3G|1|A|G|3286

Current chains

Chain A

25S rRNA

Nearby chains

Chain O

Ribosome production factor 1

Chain T

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L33-A