IL_5Z3G_068

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UGGGGC*GUGCACA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5Z3G|1|A|U|724
5Z3G|1|A|G|725
5Z3G|1|A|G|726
5Z3G|1|A|G|727
5Z3G|1|A|G|728
5Z3G|1|A|C|729
*
5Z3G|1|A|G|740
5Z3G|1|A|U|741
5Z3G|1|A|G|742
5Z3G|1|A|C|743
5Z3G|1|A|A|744
5Z3G|1|A|C|745
5Z3G|1|A|A|746

Current chains

Chain A

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L18-A

Chain X

Ribosomal RNA-processing protein 1