IL_5Z3G_069

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUAG*CGG

Length

7 nucleotides

Bulged bases

5Z3G|1|A|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_069 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.2322

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5Z3G|1|A|C|1397
5Z3G|1|A|U|1398
5Z3G|1|A|A|1399
5Z3G|1|A|G|1400
*
5Z3G|1|A|C|1411
5Z3G|1|A|G|1412
5Z3G|1|A|G|1413

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

5.8S ribosomal RNA; 5.8S rRNA

Chain O

Ribosome production factor 1

Chain Z

Protein MAK16

Chain i

60S ribosomal protein L32