IL_5Z3G_071

3D structure

PDB id

5Z3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5Z3G_071 not in the Motif Atlas

Homologous match to IL_8P9A_238

Geometric discrepancy: 0.4642

The information below is about IL_8P9A_238

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5Z3G|1|A|C|163
5Z3G|1|A|A|164
5Z3G|1|A|A|165
*
5Z3G|1|A|U|257
5Z3G|1|A|G|258

Current chains

Chain A

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L13-A

Chain Y

ATP-dependent RNA helicase HAS1

Chain d

Unassigned

Chain l

60S ribosomal protein L35-A