IL_5Z57_017
3D structure
- PDB id
- 5Z57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GUCA*UCU
- Length
- 7 nucleotides
- Bulged bases
- 5Z57|1|G|U|136
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z57_017 not in the Motif Atlas
- Geometric match to IL_8P9A_415
- Geometric discrepancy: 0.2856
- The information below is about IL_8P9A_415
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
5Z57|1|G|G|135
5Z57|1|G|U|136
5Z57|1|G|C|137
5Z57|1|G|A|138
*
5Z57|1|H|U|39
5Z57|1|H|C|40
5Z57|1|H|U|41
Current chains
- Chain G
- pre-mRNA
- Chain H
- U2 snRNA
Nearby chains
- Chain 1
- Splicing factor 3B subunit 1
- Chain 2
- Splicing factor 3B subunit 2
- Chain L
- Cell division cycle 5-like protein
- Chain v
- Splicing factor 3A subunit 2
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