IL_5Z58_012
3D structure
- PDB id
- 5Z58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- UUAUCC*GUGUA
- Length
- 11 nucleotides
- Bulged bases
- 5Z58|1|G|A|144
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5Z58_012 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3431
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
5Z58|1|G|U|142
5Z58|1|G|U|143
5Z58|1|G|A|144
5Z58|1|G|U|145
5Z58|1|G|C|146
5Z58|1|G|C|147
*
5Z58|1|H|G|31
5Z58|1|H|U|32
5Z58|1|H|G|33
5Z58|1|H|U|34
5Z58|1|H|A|35
Current chains
- Chain G
- pre-mRNA
- Chain H
- U2 snRNA
Nearby chains
- Chain 1
- Splicing factor 3B subunit 1
- Chain 6
- PHD finger-like domain-containing protein 5A
- Chain L
- Cell division cycle 5-like protein
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