IL_5ZEB_021

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

5ZEB|1|A|G|916, 5ZEB|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_021 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1283

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5ZEB|1|A|G|789
5ZEB|1|A|A|790
5ZEB|1|A|A|791
5ZEB|1|A|G|792
5ZEB|1|A|C|793
*
5ZEB|1|A|G|914
5ZEB|1|A|U|915
5ZEB|1|A|G|916
5ZEB|1|A|A|917
5ZEB|1|A|U|918
5ZEB|1|A|A|919
5ZEB|1|A|G|920
5ZEB|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15