IL_5ZEB_047

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5ZEB|1|A|A|1206

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_047 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3053

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5ZEB|1|A|G|1205
5ZEB|1|A|A|1206
5ZEB|1|A|G|1207
5ZEB|1|A|U|1208
5ZEB|1|A|G|1209
*
5ZEB|1|A|C|1218
5ZEB|1|A|U|1219
5ZEB|1|A|C|1220

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain J

50S ribosomal protein L11