IL_5ZEB_049

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5ZEB|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_049 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1395

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5ZEB|1|A|C|1322
5ZEB|1|A|G|1323
5ZEB|1|A|G|1324
5ZEB|1|A|U|1325
5ZEB|1|A|G|1326
5ZEB|1|A|A|1327
5ZEB|1|A|A|1328
5ZEB|1|A|G|1329
*
5ZEB|1|A|U|1349
5ZEB|1|A|G|1350
5ZEB|1|A|G|1351
5ZEB|1|A|A|1352
5ZEB|1|A|G|1353

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20