IL_5ZEB_053

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

5ZEB|1|A|C|1436, 5ZEB|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_053 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.5108

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5ZEB|1|A|G|1434
5ZEB|1|A|C|1435
5ZEB|1|A|C|1436
5ZEB|1|A|A|1437
5ZEB|1|A|G|1438
*
5ZEB|1|A|C|1446
5ZEB|1|A|G|1447
5ZEB|1|A|C|1448

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain U

50S ribosomal protein L23