IL_5ZEB_059

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCA*UGCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_059 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3531

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5ZEB|1|A|U|1560
5ZEB|1|A|C|1561
5ZEB|1|A|C|1562
5ZEB|1|A|A|1563
*
5ZEB|1|A|U|1608
5ZEB|1|A|G|1609
5ZEB|1|A|C|1610
5ZEB|1|A|A|1611

Current chains

Chain A

23S rRNA

Nearby chains

Chain f

30S ribosomal protein S6