IL_5ZEB_060

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

5ZEB|1|A|U|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_060 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2409

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5ZEB|1|A|C|1638
5ZEB|1|A|G|1639
5ZEB|1|A|A|1640
5ZEB|1|A|U|1641
5ZEB|1|A|G|1642
*
5ZEB|1|A|C|1797
5ZEB|1|A|U|1798
5ZEB|1|A|A|1799
5ZEB|1|A|G|1800

Current chains

Chain A

23S rRNA

Nearby chains