IL_5ZEB_093

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5ZEB|1|A|U|2355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_093 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4701

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5ZEB|1|A|C|2352
5ZEB|1|A|U|2353
5ZEB|1|A|G|2354
5ZEB|1|A|U|2355
5ZEB|1|A|G|2356
5ZEB|1|A|A|2357
5ZEB|1|A|A|2358
5ZEB|1|A|G|2359
*
5ZEB|1|A|U|2378
5ZEB|1|A|G|2379
5ZEB|1|A|G|2380
5ZEB|1|A|A|2381
5ZEB|1|A|G|2382

Current chains

Chain A

23S rRNA

Nearby chains