IL_5ZEB_110

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_110 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.123

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5ZEB|1|A|C|2876
5ZEB|1|A|U|2877
5ZEB|1|A|A|2878
5ZEB|1|A|G|2879
5ZEB|1|A|U|2880
5ZEB|1|A|A|2881
5ZEB|1|A|C|2882
*
5ZEB|1|A|G|2887
5ZEB|1|A|G|2888
5ZEB|1|A|A|2889
5ZEB|1|A|C|2890
5ZEB|1|A|C|2891
5ZEB|1|A|G|2892

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6