IL_5ZEB_114

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

5ZEB|1|A|A|2989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_114 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5ZEB|1|A|G|2961
5ZEB|1|A|A|2962
5ZEB|1|A|U|2963
5ZEB|1|A|A|2964
5ZEB|1|A|A|2965
5ZEB|1|A|C|2966
*
5ZEB|1|A|G|2986
5ZEB|1|A|G|2987
5ZEB|1|A|A|2988
5ZEB|1|A|A|2989
5ZEB|1|A|A|2990
5ZEB|1|A|C|2991

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13