IL_5ZEB_132

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

5ZEB|1|a|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_132 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5ZEB|1|a|G|144
5ZEB|1|a|G|145
5ZEB|1|a|A|146
5ZEB|1|a|U|147
5ZEB|1|a|A|148
5ZEB|1|a|A|149
5ZEB|1|a|G|150
*
5ZEB|1|a|U|165
5ZEB|1|a|C|166
5ZEB|1|a|U|167
5ZEB|1|a|A|168
5ZEB|1|a|A|169
5ZEB|1|a|U|170
5ZEB|1|a|A|171
5ZEB|1|a|C|172

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20