IL_5ZEB_161

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5ZEB|1|a|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_161 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1213

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5ZEB|1|a|G|915
5ZEB|1|a|C|916
5ZEB|1|a|A|917
*
5ZEB|1|a|U|1363
5ZEB|1|a|U|1364
5ZEB|1|a|C|1365
5ZEB|1|a|C|1366
5ZEB|1|a|C|1367

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain v

Transfer RNA; tRNA