IL_5ZEB_186

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGC*GAG

Length

7 nucleotides

Bulged bases

5ZEB|1|a|G|1425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEB_186 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.1572

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5ZEB|1|a|U|1423
5ZEB|1|a|G|1424
5ZEB|1|a|G|1425
5ZEB|1|a|C|1426
*
5ZEB|1|a|G|1443
5ZEB|1|a|A|1444
5ZEB|1|a|G|1445

Current chains

Chain a

16S rRNA

Nearby chains

Chain Q

50S ribosomal protein L19

Chain t

30S ribosomal protein S20