IL_5ZEP_009

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUCU*GAUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_009 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3634

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5ZEP|1|A|U|325
5ZEP|1|A|A|326
5ZEP|1|A|U|327
5ZEP|1|A|C|328
5ZEP|1|A|U|329
*
5ZEP|1|A|G|446
5ZEP|1|A|A|447
5ZEP|1|A|U|448
5ZEP|1|A|G|449
5ZEP|1|A|G|450

Current chains

Chain A

23S rRNA

Nearby chains