IL_5ZEP_014

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

5ZEP|1|A|G|591, 5ZEP|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.1732

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

5ZEP|1|A|G|569
5ZEP|1|A|U|570
5ZEP|1|A|A|571
5ZEP|1|A|C|572
*
5ZEP|1|A|G|583
5ZEP|1|A|A|584
5ZEP|1|A|G|585
5ZEP|1|A|U|586
5ZEP|1|A|G|587
5ZEP|1|A|A|588
5ZEP|1|A|A|589
5ZEP|1|A|A|590
5ZEP|1|A|G|591
5ZEP|1|A|A|592
5ZEP|1|A|G|593
5ZEP|1|A|U|594
5ZEP|1|A|A|595
5ZEP|1|A|C|596

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24