IL_5ZEP_034

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_034 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.314

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ZEP|1|A|C|991
5ZEP|1|A|C|992
5ZEP|1|A|G|993
5ZEP|1|A|A|994
5ZEP|1|A|U|995
5ZEP|1|A|G|996
*
5ZEP|1|A|C|1012
5ZEP|1|A|U|1013
5ZEP|1|A|G|1014
5ZEP|1|A|A|1015
5ZEP|1|A|C|1016
5ZEP|1|A|G|1017

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25