IL_5ZEP_045
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAGACAA*UCAAG
- Length
- 14 nucleotides
- Bulged bases
- 5ZEP|1|A|A|1164
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ZEP_045 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2122
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5ZEP|1|A|C|1161
5ZEP|1|A|G|1162
5ZEP|1|A|A|1163
5ZEP|1|A|A|1164
5ZEP|1|A|G|1165
5ZEP|1|A|A|1166
5ZEP|1|A|C|1167
5ZEP|1|A|A|1168
5ZEP|1|A|A|1169
*
5ZEP|1|A|U|1226
5ZEP|1|A|C|1227
5ZEP|1|A|A|1228
5ZEP|1|A|A|1229
5ZEP|1|A|G|1230
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L10
Coloring options: