IL_5ZEP_049

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5ZEP|1|A|U|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_049 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1395

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5ZEP|1|A|C|1322
5ZEP|1|A|G|1323
5ZEP|1|A|G|1324
5ZEP|1|A|U|1325
5ZEP|1|A|G|1326
5ZEP|1|A|A|1327
5ZEP|1|A|A|1328
5ZEP|1|A|G|1329
*
5ZEP|1|A|U|1349
5ZEP|1|A|G|1350
5ZEP|1|A|G|1351
5ZEP|1|A|A|1352
5ZEP|1|A|G|1353

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20