IL_5ZEP_065

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CAUAUAU

Length

9 nucleotides

Bulged bases

5ZEP|1|A|U|1730

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_065 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5384

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5ZEP|1|A|A|1702
5ZEP|1|A|G|1703
*
5ZEP|1|A|C|1726
5ZEP|1|A|A|1727
5ZEP|1|A|U|1728
5ZEP|1|A|A|1729
5ZEP|1|A|U|1730
5ZEP|1|A|A|1731
5ZEP|1|A|U|1732

Current chains

Chain A

23S rRNA

Nearby chains