IL_5ZEP_067

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAG*CGAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_067 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.2856

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5ZEP|1|A|A|1748
5ZEP|1|A|U|1749
5ZEP|1|A|A|1750
5ZEP|1|A|G|1751
*
5ZEP|1|A|C|1762
5ZEP|1|A|G|1763
5ZEP|1|A|A|1764
5ZEP|1|A|A|1765
5ZEP|1|A|U|1766

Current chains

Chain A

23S rRNA

Nearby chains