IL_5ZEP_080
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUAAGA*UUUAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ZEP_080 not in the Motif Atlas
- Geometric match to IL_4V9F_057
- Geometric discrepancy: 0.3841
- The information below is about IL_4V9F_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34822.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5ZEP|1|A|U|2068
5ZEP|1|A|U|2069
5ZEP|1|A|A|2070
5ZEP|1|A|A|2071
5ZEP|1|A|G|2072
5ZEP|1|A|A|2073
*
5ZEP|1|A|U|2110
5ZEP|1|A|U|2111
5ZEP|1|A|U|2112
5ZEP|1|A|A|2113
5ZEP|1|A|A|2114
5ZEP|1|A|G|2115
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain w
- Transfer RNA; tRNA
Coloring options: