IL_5ZEP_087

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

5ZEP|1|A|A|2663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_087 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0786

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

5ZEP|1|A|G|2293
5ZEP|1|A|A|2294
*
5ZEP|1|A|U|2662
5ZEP|1|A|A|2663
5ZEP|1|A|C|2664
5ZEP|1|A|C|2665

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2