IL_5ZEP_092

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

5ZEP|1|A|U|2387, 5ZEP|1|A|U|2395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_092 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.2167

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5ZEP|1|A|G|2347
5ZEP|1|A|G|2348
5ZEP|1|A|A|2349
5ZEP|1|A|G|2350
5ZEP|1|A|A|2351
*
5ZEP|1|A|U|2383
5ZEP|1|A|C|2384
5ZEP|1|A|G|2385
5ZEP|1|A|U|2386
5ZEP|1|A|U|2387
5ZEP|1|A|G|2388
5ZEP|1|A|U|2389
5ZEP|1|A|U|2390
5ZEP|1|A|G|2391
5ZEP|1|A|A|2392
5ZEP|1|A|A|2393
5ZEP|1|A|A|2394
5ZEP|1|A|U|2395
5ZEP|1|A|A|2396
5ZEP|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains