IL_5ZEP_109
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGAG*CAAGACCAG
- Length
- 14 nucleotides
- Bulged bases
- 5ZEP|1|A|C|3004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ZEP_109 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.137
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5ZEP|1|A|U|2860
5ZEP|1|A|U|2861
5ZEP|1|A|G|2862
5ZEP|1|A|A|2863
5ZEP|1|A|G|2864
*
5ZEP|1|A|C|2998
5ZEP|1|A|A|2999
5ZEP|1|A|A|3000
5ZEP|1|A|G|3001
5ZEP|1|A|A|3002
5ZEP|1|A|C|3003
5ZEP|1|A|C|3004
5ZEP|1|A|A|3005
5ZEP|1|A|G|3006
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L13
Coloring options: