IL_5ZEP_176

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_176 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1155

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ZEP|1|a|C|1285
5ZEP|1|a|G|1286
5ZEP|1|a|G|1287
5ZEP|1|a|A|1288
5ZEP|1|a|U|1289
5ZEP|1|a|C|1290
*
5ZEP|1|a|G|1311
5ZEP|1|a|U|1312
5ZEP|1|a|G|1313
5ZEP|1|a|A|1314
5ZEP|1|a|A|1315
5ZEP|1|a|G|1316

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13