IL_5ZEP_202

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UACG*CCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEP_202 not in the Motif Atlas

Geometric match to IL_8C3A_444

Geometric discrepancy: 0.3764

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

5ZEP|1|B|U|3
5ZEP|1|B|A|4
5ZEP|1|B|C|5
5ZEP|1|B|G|6
*
5ZEP|1|B|C|111
5ZEP|1|B|C|112
5ZEP|1|B|G|113
5ZEP|1|B|A|114

Current chains

Chain B

5S rRNA

Nearby chains

Chain P

50S ribosomal protein L18