IL_5ZET_034

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_034 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3139

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ZET|1|A|C|991
5ZET|1|A|C|992
5ZET|1|A|G|993
5ZET|1|A|A|994
5ZET|1|A|U|995
5ZET|1|A|G|996
*
5ZET|1|A|C|1012
5ZET|1|A|U|1013
5ZET|1|A|G|1014
5ZET|1|A|A|1015
5ZET|1|A|C|1016
5ZET|1|A|G|1017

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25