IL_5ZET_046

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

5ZET|1|A|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_046 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.2237

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5ZET|1|A|G|1177
5ZET|1|A|U|1178
5ZET|1|A|U|1179
5ZET|1|A|G|1180
*
5ZET|1|A|C|1194
5ZET|1|A|A|1195
5ZET|1|A|C|1196
5ZET|1|A|C|1197

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25