IL_5ZET_091

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

5ZET|1|A|U|2387, 5ZET|1|A|U|2395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZET_091 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.2167

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5ZET|1|A|G|2347
5ZET|1|A|G|2348
5ZET|1|A|A|2349
5ZET|1|A|G|2350
5ZET|1|A|A|2351
*
5ZET|1|A|U|2383
5ZET|1|A|C|2384
5ZET|1|A|G|2385
5ZET|1|A|U|2386
5ZET|1|A|U|2387
5ZET|1|A|G|2388
5ZET|1|A|U|2389
5ZET|1|A|U|2390
5ZET|1|A|G|2391
5ZET|1|A|A|2392
5ZET|1|A|A|2393
5ZET|1|A|A|2394
5ZET|1|A|U|2395
5ZET|1|A|A|2396
5ZET|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains