IL_5ZEU_017

3D structure

PDB id

5ZEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZEU_017 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.314

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5ZEU|1|a|A|371
5ZEU|1|a|C|372
5ZEU|1|a|A|373
5ZEU|1|a|A|374
5ZEU|1|a|U|375
*
5ZEU|1|a|A|389
5ZEU|1|a|U|390

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16