3D structure

PDB id
5ZEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
M. smegmatis P/P state 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5ZEU_033 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.0958
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

5ZEU|1|a|G|653
5ZEU|1|a|G|654
5ZEU|1|a|A|655
5ZEU|1|a|A|656
5ZEU|1|a|U|657
5ZEU|1|a|U|658
*
5ZEU|1|a|A|692
5ZEU|1|a|G|693
5ZEU|1|a|G|694
5ZEU|1|a|A|695
5ZEU|1|a|A|696
5ZEU|1|a|C|697

Current chains

Chain a
16S rRNA

Nearby chains

Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain r
30S ribosomal protein S18 2

Coloring options:


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