IL_5ZLU_001

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_001 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.225

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5ZLU|1|DD|U|28
5ZLU|1|DD|C|29
*
5ZLU|1|DD|G|43
5ZLU|1|DD|A|44
5ZLU|1|DD|A|45

Current chains

Chain DD

P-site tRNA

Nearby chains

Chain G

Small subunit ribosomal RNA; SSU rRNA

Chain R

30S ribosomal protein S13