IL_5ZLU_070

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_070 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1598

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5ZLU|1|V|G|188
5ZLU|1|V|G|189
5ZLU|1|V|A|190
5ZLU|1|V|A|191
5ZLU|1|V|C|192
5ZLU|1|V|U|193
5ZLU|1|V|G|194
*
5ZLU|1|V|C|201
5ZLU|1|V|U|202
5ZLU|1|V|C|203
5ZLU|1|V|A|204
5ZLU|1|V|G|205
5ZLU|1|V|U|206
5ZLU|1|V|A|207
5ZLU|1|V|C|208

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain i

50S ribosomal protein L15

Chain w

50S ribosomal protein L31

Chain z

50S ribosomal protein L34