IL_5ZLU_071

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_071 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1263

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5ZLU|1|V|U|239
5ZLU|1|V|G|240
5ZLU|1|V|A|241
5ZLU|1|V|G|242
5ZLU|1|V|U|243
5ZLU|1|V|A|244
5ZLU|1|V|G|245
*
5ZLU|1|V|C|253
5ZLU|1|V|G|254
5ZLU|1|V|A|255
5ZLU|1|V|A|256
5ZLU|1|V|A|257
5ZLU|1|V|G|258

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L35

Chain i

50S ribosomal protein L15